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PathviewViz
KEGG pathway maps for differential expression
Data
Enriched Pathways
Pathway View
Upload & settings
DEG list (CSV/TSV)
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Needs a gene ID column and a numeric value column (e.g. log2FC).
Download example data (example_deg.csv)
Preview
GSEA settings
Organism
Human (Homo sapiens)
Mouse (Mus musculus)
Rat (Rattus norvegicus)
Zebrafish (Danio rerio)
Fly (D. melanogaster)
Yeast (S. cerevisiae)
Gene ID type
SYMBOL
ENTREZID
ENSEMBL
REFSEQ
UNIGENE
Gene ID column
Value column (log2FC)
Adj. p-value cutoff
Ranks all mapped genes by the value column and runs KEGG GSEA. The cutoff applies to the BH-adjusted p-value.
Pathway Enrichment Analysis
Mapping summary
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Updating mapping...
Ranked pathways
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Pathway & appearance
KEGG pathway ID(s)
Digits only; the organism prefix (hsa, mmu, ...) is added automatically.
Colours & scale
Color scale limit (|value|)
Down-regulated
Midpoint
Up-regulated
Colors for down-regulated, midpoint, and up-regulated genes.
Render pathway
Result
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